CentroidFold -- RNA Secondary Structure Predictor

URL:
http://www.ncrna.org/centroidfold/
What you can do:
Use to generate a RNA secondary structure from a sequence.
Highlights:
  • The CENTROIDFOLD web server is a web application for RNA secondary structure prediction powered by one of the most accurate prediction engine.
  • It accepts two kinds of sequence data: a single RNA sequence and a multiple alignment of RNA sequences.
  • It responds with a prediction result shown as a popular base-pair notation and a graph representation.
  • PDF version of the graph representation is also available.
  • For a multiple alignment sequence, the server predicts a common secondary structure.
  • The user can paste a single RNA sequence (FASTA or plain sequence text) or a multiple alignment (CLUSTAL-W format) into the textarea then click on the 'execute CentroidFold' button.
  • The major advantage of this server is that it employs the original CentroidFold software as its prediction engine which scores the best accuracy in our benchmark results.
Keywords:
  • RNA
  • RNA structure prediction
  • RNA secondary structure
  • FASTA
  • CLUSTAL-W
Literature & Tutorials:
PubMed Link: CENTROIDFOLD: a web server for RNA secondary structure prediction
This record last updated: 09-24-2009
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