PSCAN -- Promoter Scanning web server
What you can do:
Find information about transcription factor binding sites.
Highlights:
- Pscan is a software tool that scans a set of sequences (e.g. promoters) from co-regulated or co-expressed genes with motifs describing the binding specificity of known transcription factors and assesses which motifs are significantly over- or under-represented, providing thus hints on which transcription factors could be common regulators of the genes studied, together with the location of their candidate binding sites in the sequences.
- Pscan does not resort to comparisons with orthologous sequences and experimental results show that it compares favorably to other tools for the same task in terms of false positive predictions and computation time.
Keywords:
- promoter
- gene transcription
- DNA motif
- transcription factor
- transcription factor binding site
Literature & Tutorials:
This record last updated: 08-16-2021