ShotgunFunctionalizeR -- R-package for functional comparison of metagenomes

URL:
http://shotgun.math.chalmers.se/
What you can do:
Analyze data from functional analysis on fragmented microbial genetic material.
Highlights:
  • ShotgunFunctionalizeR contains tools for importing, annotating and visualizing metagenomic data produced by shotgun high-throughput sequencing.
  • It contains several statistical procedures for assessing functional differences between samples, both for individual genes and for entire pathways.
  • The tool is based on a Poisson model, which is highly flexible and thus applicable to a wide range of different experimental designs.
Keywords:
  • Poisson model
  • metagenome
  • metagenomics
  • microbe
Literature & Tutorials:
PubMed Link: ShotgunFunctionalizeR: an R-package for functional comparison of metagenomes
This record last updated: 04-18-2014
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