3D-Garden -- Global and Restrained Docking Exploration Nexus
What you can do:
Model protein-protein complexes.
Highlights:
- 3D-Garden is a flexible docking system that allows sophisticated programming of surface patches by the user via a facet representation of the interactors' molecular surfaces (generated with the marching cubes algorithm).
- Flexibility is implemented as a weighted exhaustive conformer search for each clashing pair of molecular branches in a set of 5000 models filtered from around approximately 340,000 initially.
Keywords:
- protein-protein interaction
- protein conformation
- protein complex conformation
- protein complex
- protein complex modelling
This record last updated: 01-11-2010