3D-Garden -- Global and Restrained Docking Exploration Nexus

What you can do:
Model protein-protein complexes.
Highlights:
  • 3D-Garden is a flexible docking system that allows sophisticated programming of surface patches by the user via a facet representation of the interactors' molecular surfaces (generated with the marching cubes algorithm).
  • Flexibility is implemented as a weighted exhaustive conformer search for each clashing pair of molecular branches in a set of 5000 models filtered from around approximately 340,000 initially.
Keywords:
  • protein-protein interaction
  • protein conformation
  • protein complex conformation
  • protein complex
  • protein complex modelling
This record last updated: 01-11-2010
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