SMPDB -- Small Molecule Pathway Database
URL:
What you can do:
Find information about pathway elucidation and pathway discovery in metabolomics, transcriptomics, proteomics and systems biology.
Highlights:
- The Small Molecule Pathway Database (SMPDB) is an interactive, visual database containing more than 350 small-molecule pathways found in humans.
- It provides detailed, hyperlinked diagrams of human metabolic pathways, metabolic disease pathways, metabolite signaling pathways and drug-action pathways.
- All SMPDB pathways include information on the relevant organs, organelles, subcellular compartments, protein cofactors, protein locations, metabolite locations, chemical structures and protein quaternary structures.
- Each small molecule is hyperlinked to detailed descriptions contained in the Human Metabolome Database (HMDB) or DrugBank and each protein or enzyme complex is hyperlinked to UniProt.
- All SMPDB pathways are accompanied with detailed descriptions, providing an overview of the pathway, condition or processes depicted in each diagram.
- Users may query SMPDB with lists of metabolite names, drug names, genes/protein names, SwissProt IDs, GenBank IDs, Affymetrix IDs or Agilent microarray IDs.
- Gene, metabolite and protein concentration data can also be visualized through SMPDB's mapping interface.
Keywords:
- small molecules
- drug-action pathway
- metabolite signaling pathway
- metabolic disease pathway
Literature & Tutorials:
PubMed Link: SMPDB: The Small Molecule Pathway Database
This record last updated: 02-24-2010