SMPDB -- Small Molecule Pathway Database

What you can do:
Find information about pathway elucidation and pathway discovery in metabolomics, transcriptomics, proteomics and systems biology.
  • The Small Molecule Pathway Database (SMPDB) is an interactive, visual database containing more than 350 small-molecule pathways found in humans.
  • It provides detailed, hyperlinked diagrams of human metabolic pathways, metabolic disease pathways, metabolite signaling pathways and drug-action pathways.
  • All SMPDB pathways include information on the relevant organs, organelles, subcellular compartments, protein cofactors, protein locations, metabolite locations, chemical structures and protein quaternary structures.
  • Each small molecule is hyperlinked to detailed descriptions contained in the Human Metabolome Database (HMDB) or DrugBank and each protein or enzyme complex is hyperlinked to UniProt.
  • All SMPDB pathways are accompanied with detailed descriptions, providing an overview of the pathway, condition or processes depicted in each diagram.
  • Users may query SMPDB with lists of metabolite names, drug names, genes/protein names, SwissProt IDs, GenBank IDs, Affymetrix IDs or Agilent microarray IDs.
  • Gene, metabolite and protein concentration data can also be visualized through SMPDB's mapping interface.
  • small molecules
  • drug-action pathway
  • metabolite signaling pathway
  • metabolic disease pathway
Literature & Tutorials:
This record last updated: 02-24-2010
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