HexServer -- FFT-based protein docking server
What you can do:
Perform protein docking prediction.
Highlights:
- HexServer is the first Fourier transform (FFT)-based protein docking server to be powered by graphics processors.
- Using two graphics processors simultaneously, a typical 6D docking run takes approximately 15 s, which is up to two orders of magnitude faster than conventional FFT-based docking approaches using comparable resolution and scoring functions.
- The server requires two protein structures in PDB format to be uploaded, and it produces a ranked list of up to 1000 docking predictions.
- Knowledge of one or both protein binding sites may be used to focus and shorten the calculatio when such information is available.
- The first 20 predictions may be accessed individually, and a single file of all predicted orientations may be downloaded as a compressed multi-model PDB file.
Keywords:
- protein-protein interaction
- protein interaction prediction
- protein docking prediction
- protein docking site
- first Fourier transform
Literature & Tutorials:
This record last updated: 06-04-2010