PLAST-ncRNA -- Partition function Local Alignment Search Tool for non-coding RNA sequences

URL:
http://plastrna.njit.edu/rnagenome/index
What you can do:
Perform local alignment for non-coding RNA.
Highlights:
  • PLAST-ncRNA is an online implementation of the PLAST (Partition function Local Alignment Search Tool) alignment algorithm based on probabilities.
  • The server takes as input a query RNA sequence and a large genome sequence, and outputs a list of hits that are above a mean posterior probability threshold.
  • The output is presented in a format suited to local alignment.
  • It can also be viewed within the PLAST alignment viewer applet that provides a list of all hits found and highlights regions of high posterior probability within each local alignment.
Keywords:
  • non coding RNA
  • RNA sequence alignment
Literature & Tutorials:
PubMed Link: PLAST-ncRNA: Partition function Local Alignment Search Tool for non-coding RNA sequences
This record last updated: 07-16-2010
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