NGSmethDB -- Next Generation Sequencing single-cytosine-resolution DNA METHylation DataBase
What you can do:
Find information about methylation data from next generation sequencing data.
Highlights:
- NGSmethDB is a database for the storage and retrieval of methylation data derived from NGS.
- Two cytosine methylation contexts (CpG and CAG/CTG) are considered.
- Through a browser interface coupled to a MySQL backend and several data mining tools, the user can search for methylation states in a set of tissues, retrieve methylation values for a set of tissues in a given chromosomal region, or display the methylation of promoters among different tissues.
- It is currently populated with human, mouse and Arabidopsis data, but other methylomes will be incorporated through an automatic pipeline as soon as new data become available. Dump downloads for three coverage levels (1, 5 or 10 reads) are available.
Keywords:
- DNA methylation
- single-cytosine-resolution DNA methylation
- whole genome methylation map
- differential tissue methylation
- pathological differential methylation
Literature & Tutorials:
This record last updated: 06-14-2011