ASPicDB -- Alternative Splicing PredICtion DataBase
What you can do:
Find information about alternative splicing gene variants.
Highlights:
- ASPicDB is a database designed to provide access to reliable annotations of the alternative splicing pattern of human genes, and to the functional annotation of predicted isoforms.
- A total of 256,939 protein variants from 17,191 multi-exon genes have been extensively annotated through machine learning tools providing information of the protein type (globular and transmembrane), localization, presence of PFAM domains, signal peptides, GPI-anchor propeptides, transmembrane and coiled-coil segments.
- Full-length variants can be now specifically selected based on the annotation of CAGE-tags and polyA signal and/or polyA sites, marking transcription initiation and termination sites, respectively.
- The retrieval can be carried out at gene, transcript, exon, protein or splice site level allowing the selection of data sets fulfilling one or more features settled by the user.
- The retrieval interface also enables the selection of protein variants showing specific differences in the annotated features.
Keywords:
- alternative splicing
- multi-exon gene
- protein variant annotation
Literature & Tutorials:
This record last updated: 06-14-2011