PRIDB -- Protein-RNA Interface DataBase
What you can do:
Find information about protein-RNA complexes from the Protein Data Bank (PDB).
Highlights:
- PRIDB is a comprehensive database of protein-RNA interfaces extracted from complexes in the Protein Data Bank (PDB).
- It is designed to facilitate detailed analyses of individual protein-RNA complexes and their interfaces, in addition to automated generation of user-defined data sets of protein-RNA interfaces for statistical analyses and machine learning applications.
- For any chosen PDB complex or list of complexes, PRIDB rapidly displays interfacial amino acids and ribonucleotides within the primary sequences of the interacting protein and RNA chains.
- It also identifies ProSite motifs in protein chains and FR3D motifs in RNA chains and provides links to these external databases, as well as to structure files in the PDB.
- An integrated JMol applet is provided for visualization of interacting atoms and residues in the context of the 3D complex structures.
- The current version of PRIDB contains structural information regarding 926 protein-RNA complexes available in the PDB.
- Atomic- and residue-level contact information for the entire data set can be downloaded in a simple machine-readable format.
- Several non-redundant benchmark data sets of protein-RNA complexes are provided.
Keywords:
- RNA-protein complex
- RNA-protein interaction
- protein-RNA interaction
- protein-RNA complex
Literature & Tutorials:
PubMed Link: PRIDB: a Protein-RNA Interface Database.
This record last updated: 06-14-2011