RBPDB -- RNA-Binding Protein DataBase
What you can do:
Find information about specificities of proteins that bind to RNA.
Highlights:
- The RNA-Binding Protein DataBase (RBPDB) is a collection of experimental observations of RNA-binding sites, both in vitro and in vivo, manually curated from primary literature.
- To build RBPDB, a literature search was performed for experimental binding data for all RNA-binding proteins (RBPs) with known RNA-binding domains in four metazoan species (human, mouse, fly and worm).
- In total, RPBDB contains binding data on 272 RBPs, including 71 that have motifs in position weight matrix format, and 36 sets of sequences of in vivo-bound transcripts from immunoprecipitation experiments.
- The database is accessible by a web interface which allows browsing by domain or by organism, searching and export of records, and bulk data downloads.
- Users can also use RBPDB to scan sequences for RBP-binding sites.
Keywords:
- RNA-binding protein specificity
- RNA-binding protein
- RNA-binding protein site
- RNA-binding site
- homo sapiens
- mus musculus
- Drosophila melanogaster
- RBP
Literature & Tutorials:
PubMed Link: RBPDB: a database of RNA-binding specificities.
This record last updated: 06-14-2011