OMPdb -- Outer Membrane Protein DataBase
What you can do:
Find information about {beta}-barrel outer membrane proteins.
Highlights:
- OMPdb is a collection of integral β-barrel outer membrane proteins from Gram-negative bacteria.
- The database currently contains 69,354 proteins, which are classified into 85 families, based mainly on structural and functional criteria.
- There are cross-references to other databases, references to the literature and annotation for sequence features, like transmembrane segments and signal peptides.
- Via the web interface, the user can not only browse the available data, but submit advanced text searches and run BLAST queries against the database protein sequences or domain searches against the collection of profile Hidden Markov Models that represent each family's domain organization as well.
Keywords:
- β-barrel outer membrane protein
- outer membrane protein
- outer-membrane protein
Literature & Tutorials:
This record last updated: 06-14-2011