PREX -- PeroxiRedoxin classification indEX
What you can do:
Find information about peroxiredoxin protein subfamily.
Highlights:
- PREX is a database of currently 3516 peroxiredoxin (Prx or PRDX) protein sequences unambiguously classified into one of six distinct subfamilies.
- Peroxiredoxin family members were identified using the Deacon Active Site Profiler (DASP) bioinformatics tool to focus in on functionally relevant sequence fragments surrounding key residues required for protein activity.
- Searches of this database can be conducted by protein annotation, accession number, PDB ID, organism name or protein sequence.
- Output includes the subfamily to which each classified Prx belongs, accession and GI numbers, genus and species and the functional site signature used for classification.
- The query sequence is also presented aligned with a select group of Prxs for manual evaluation and interpretation by the user.
- A synopsis of the characteristics of members of each subfamily is also provided along with pertinent references.
Keywords:
- peroxiredoxin
- cysteine-dependent peroxidase
Literature & Tutorials:
This record last updated: 06-14-2011