Prokaryotes (Escherichia coli, Bacillus subtilis, and others)
Find information about sequence motifs in prokaryotic genomes.
Find information about genes that confer antibiotic resistance in bacteria.
Search for information on enterobacterial genome sequences at various stages of analysis, and gene expression data from preliminary experiments.
Find information about orthologous genes in prokaryotes.
A searchable databse of alternate ORFs for over 600 fully sequenced microbial genomes.
A web server for the effortless retrieval of prokaryotic gene context and sequence.
Search for comprehensive information on Bacillus subtilis Genome, mutants, and DNA microarray data.
Interactively visualize and search fully labeled bacterial genomic maps.
Database integrating physical (protein-protein) and functional interactions within the context of an E. coli knowledgebase.
Search for a collection of over 205 pathway/genome databases.
Model E.coli cell on a computer.
An automatic identification and updating system that provides comprehensive prokaryotic CDS information.
Extract with precision and further analyze CRISPRs from genomic sequences.
Automatically recovers from CRISPRdb all members of a genus containing a CRISPR and compares them.
Search for genomic information of Campylobacter.
Search genomic information of Clostridium spp.
A reference database for corynebacterial gene regulatory networks.
Search for information on the genomes of several cyanobacteria model organisms, including Cyanobacterium Synechocystis sp. strain PCC6803.
Search for information on Bacillus transcription factors and conduct comparative genomics study on TFs.
Find information about genes essential to life in prokaryotes and eukaryotes.
Search for computationally predicted operons of all the sequenced prokaryotic genomes.
Search for comprehensive information on Escherichia coli genomic research.
Find information about enterobacteria on the NIAID established list of Select Agents.
A database for the inference of functional interactions in E. coli.
Search for comprehensive genetic information and experimental results of Escherichia coli K-12.
An in silico analysis of the subcellular locations of Escherichia coli proteins and comparison with experimentally derived locations.
Search for comprehensive biological information on bacterium Escherichia coli K12 MG1655.
Retrieve information regarding genes, proteins, and intergenic regions of the E. coli K-12 genome and proteome.
A web-based database for comparative proteomics of Escherichia coli.
Find information about effector proteins.
Find genome annotations for bacteria, protists, fungi, plants and invertebrate metazoa.
A gene context analysis for orthologous proteins, conserved domains and metabolic pathways.
Identify infectious pathogens and their representative genomic sequences through selection of associated epidemiology metadata.
A web-based software/database system aimed at an improved and accelerated annotation of prokaryotic genomes.
Characterize functions of unknown Escherichia coli K-12 proteins.
Query and analyze genome data from bacterial species.
Find information about microbial proteomes.
Database of predicted highly expressed genes in prokaryotic complete genomes under translational selection.
A literature-derived database covering known infectious disease biomarkers.
A data management and analysis system for metagenomes
Search for distinct nucleotide sequences that distinguish microbial organisms from others.
Search for comprehensive genomic and proteomic information on pathogen Listeria.
Analyze the genome of Leptospira interrogans.
Generate allelic profiles to characterize strains of Neisseria meningitidis.
A tool that allows facile and in-depth visualization of prokaryotic transcriptomic and proteomic data in conjunction with genomics data.
Explore all known physical microbial interactions.
Facilitates the analysis and visualization of expression data in compendia compiled from multiple laboratories.
Search and analyze genomes of marine bacteria.
Find novel commercially useful enzymes from microbial genomes.
Search for information useful for designing axenic culture media for obligate parasitic bacteria.
Find information about communication networks in microbes.
Find information about 1000s of microbial genomes.
Find information about 1000s of microbial genomes.
An interactive online tool that facilitates bacterial genomic island or 'mobile genome' (mobilome) discovery.
Search genomic information of Mollicutes based on annotation, position on the chromosomes or sequence similarity.
A database dedicated to the study of genome conservation.
Search for Bacillus subtilis genomic information, including gene mapping and codon usage.
Predict operons in microbial genomes.
Search for genomic and associated information on the important human pathogens.
Search for microbial growth temperature data.
Information related to pathogen-host interactions.
A visual analysis platform for proteomic data exploration of microbial organisms.
Search for curated information on prokaryotic gene expression and regulatory networks.
Find information about prokaryotic polymorphic simple sequence repeats.
Find information about A-C priority pathogenic bacteria.
Database of complete phylomes derived for different genomes within a specific taxonomic range.
Find confirmed translation initiation sites (TISs) for prokaryotic genomes.
A prophage prediction tool coupled with a prediction database, a web server and web service.
Search annotations for Pseudomonas aeruginosa genome.
A web-based tool for identifying toxin-antitoxin loci in prokaryotes.
Maximize your ability to discriminate terminal restriction fragments obtained during T-RFLP to take advantage of this powerful community fingerprinting technique.
Find information about predicted regulons in prokaryotic transcription regulation.
Search for manually curated regulatory interactions in prokaryotes that captures the knowledge in public scientific literature using a controlled vocabulary.
Search for information on the transcriptional regulatory network of Escherichia coli K12.
Search Rhodobacter sphaeroides Genome.
Search for comprehensive information on Rhodobacter sphaeroides Genome.
An online tool for the identification and visualization of atypical regions of bacterial genomes through oligonucleotide usage.
Conduct systems biology analysis of Pseudomonas.
Search for genomic information on enteric bacterial pathogens Shigella.
Software for analysis of population variation in community genomic datasets.
Find genomic information about group A and group B streptococci.
Search for curated dataset of DNA and protein sequences of Bacillus subtilis 168, with the relevant annotations and functional assignments.
A supertree database for combined and integrative multilocus sequence typing analysis of the Bacillus cereus group of bacteria.
Search for genome-wide annotations of regulatory sites in yeast and prokaryotes genomes.
Find information about Type 2 toxin-antitoxin loci in bacteria and archaea.
Find genomic information about tuberculosis.
Identify targets of small (non-coding) RNA action.
Search for annotated genomic information on pathogenic bacteria.
Search for curated information of protein families based on Hidden Markov Models.
Browse archaeal genomes.
Search for documented and predicted Pathogenicity islands (PAIs).
Search for current knowledge about virulence factors (VFs) from various bacterial pathogens.
Interactively visualize microbial genomes and generate high-quality scalable images.
Search for comprehensive information on social bacterium Myxococcus xanthus.
Study comparative genomics of Escherichia coli, Shigella and Salmonella.
Find metabolic networks and phylogenomic information on a taxonomically diverse range of eukaryotes.
Find information about genes that encode 16S, 23S, and 5S ribosomal RNAs in bacteria and archaea.
A collection of online programs designed to manipulate and analyze spoligotype data sets of the Mycobacterium tuberculosis complex.
Conduct bacterial comparative genomics.