Genome browsers, genome annotation, genomic sequence analysis
Automatically identify the most likely coding sequences (CDSs) in a large contig or a complete bacterial genome sequence.
Suite of web tools for the functional profiling of genome scale experiments.
Perform automated and in-depth annotation of bacterial genomes.
Process and analyze bacterial genome, transcriptome and proteome data.
Analyze, visualize and interpret comparative genomic hybridization (CGH) data.
A program for locating copy number variations in a single genome.
Infer genomic rearrangements based on common intervals.
A public database for storing clinical information about tumor samples and microarray data, emphasizing array comparative genomic hybridization (aCGH) and data mining of gene copy number changes.
A novel database server that classifies GenBank's dbEST (database of expressed gene sequences) libraries and removes contaminants.
Perform batch annotation on a sizable genomic region.
Find a comprehensive summary of structural variation in the human genome.
Demarcate functional regions in genomic DNA sequences using a list of tools.
Visualize genomes of interest.
Access to whole genome alignments of human, mouse, rat and fish sequences.
Perform high throughput annotation of expressed sequence tags (ESTs).
Find genome annotation, databases and other information for chordate and selected model organism and disease vector genomes.
Use a suite of three web-based visualization tools to graphically display alignment information from comparisons among several fixed and user-supplied sequences from related enterobacterial species, anchored on a reference genome.
Find information about the semantic similarity between Gene Ontology terms.
Analyze the variation of GC content in genomic sequences.
Solve genome rearrangement problems.
Find information about enzyme reaction pathways.
Find genomic information.
A web-based environment for the analysis of Array CGH and gene expression which includes functional profiling.
Annotate crude EST (expressed sequence tag) specifically dedicated to comparative mapping approaches.
Predict of transcription factor binding sites or visualize sequence correspondences among long DNA sequences.
Predict isochores at the genomic sequence level.
Provides functional annotation of genes by BLAST comparisons against the manually curated KEGG GENES database.
Interpret genome annotation data mapped onto complete or partial genome sequences.
Align mRNA or expressed sequence tags (EST) and genome sequences.
Perform rapid verification of sets of annotated genes and frameshifts in previously published bacterial genomes.
Process and manipulate multiple alignments of genomic sequence.
Align multiple, long genomic DNA sequences quickly and with good sensitivity.
Perform multiple alignment of genomic sequences.
Use to manage multiple -omic datasets simultaneously.
Identify interspersed repetitive elements in BAC-sized or smaller genomic regions.
Display phylogenomic profiles of bacterial protein sequences and infer pairwise gene functional relationships.
Use for sequence-based prediction of protein subcellular localization.
Perform sequence similarity searching against complete genomes databases using the Fasta programs.
Analyze genome rearrangement between two chromosomal genomes.
Find raw sequencing data from the "next" generation of sequencing platforms including Roche 454 GS Systemxae, Illumina Genome Analyzerxae, Applied Biosystems SOLiDxae System, Helicos Heliscopexae, Complete Genomicsxae, and others.
Perform multiple alignment of large genomic sequences.
Browse archaeal genomes.
Get a rapid and reliable display of any requested portion of genomes at any scale, together with dozens of aligned annotation tracks.
A project for mapping between Affymetrix Exon Arrays and their corresponding genome data.
Designed to map millions of short reads, emerged by next-generation sequencing technology, back to the reference genomes, and carry out post-analysis.
Map large expressed sequence tag (EST) and cDNA datasets to genomic DNA.
A public web server for characterising and manipulating gene lists resulting from mining high-throughput genomic data.