RNA interference
Search for information on Arabidopsis endogenous small RNAs - microRNAs (miRNAs) and short-interfering RNAs (siRNAs).
Learn how a protein is involved in different cellular pathways.
An siRNA design program based on exon-based siRNA design algorithm considering alternative splicing.
The Database for Computational Modeling of Gene Silencing is an integration of heterogeneous data sources about C. elegans with capabilities for compositional data mining across diverse domains.
Search for sequence information on rice, maize and other cereal crops small RNAs.
Locate chromatin-associated proteins, including RNAi-associated proteins, for a broad range of organisms.
Provides an overview of the genomic organization of microRNAs and extent of conservation during evolution in different metazoan species.
Analyze sequence relationships between microRNAs.
Design siRNAs for RNAi with quality control.
Find information about microRNA targets and function.
Evaluate and design optimized dsRNA constructs.
Browse and cross-correlate data from large-scale RNAi studies using Drosophila cell lines.
Search for Drosophila RNAi screening data.
Find evidence of miRNAs in a gene set of interest.
Search for information on RNAi induced cell-based Drosophila and Caenorhabditis elegans phenotypes.
Search for sequences of published functional siRNA molecules targeting human genes and associated information.
Find information about the impact of miRNAs on biological pathways and cellular phenotypes.
Distinguish between real and pseudo microRNA precursors
An improved approach and software implementation for genome-wide fast microRNA precursor scans.
Find microRNA target predictions and expression profiles in this comprehensive resource.
Find information about microRNA expression.
A web tool for simple microRNA prediction in genome sequences.
Search for natural antisense transcripts (NATs) in human, mouse, fly and other eukaryotic genomes.
Search for information to analyze non-coding RNAs.
An online sever calculating thermodynamic features of sense-antisense hybridization.
Find information about microRNA sequences and targets in plants.
Find information about microRNAs in plants.
Compare phenotypes of a given gene or gene set in different model organisms.
Search for naturally occurring DNA variations in putative microRNA target sites.
Predict miRNA genes.
Predict siRNA efficacy.
Search for information on experimentally studied mammalian non-coding RNAs (ncRNAs), including many associated with diseases and/or developmental processes.
Predict multiple potential binding sites of miRNAs in large target RNAs.
Search for shRNA related information and website.
Archive, distribute and analyze phenotypic data from large-scale RNAi analyses in Caenorhabditis elegans.
Find information about RNA-RNA interaction.
Design RNA-targeting nucleic acids, which include small interfering RNAs (siRNAs), antisense oligonucleotides and trans-cleaving ribozymes for gene knock-down studies.
Design oligodeoxynucleotide sequences for the in vitro production of siRNA duplexes with T7 RNA polymerase.
Search for targets of miRNA gene silencing in animals, plants and viruses.
Find information about microRNA target mRNA.
To obtain unique names for novel miRNA genes prior to publication of results and to search sequence information of published miRNAs.
Find information about the interaction between transcription factors and microRNA.
Search for curated information of the known virus miRNA genes and the known/putative target sites of human, mice, rat and chicken miRNAs.
Predict viral miRNA hairpins.
Estimate off-target effects by the long double-stranded RNA used in RNAi studies.
Search for information about diseases caused by miRNA deregulation.
Search for comprehensive microRNA sequence data, annotation and predicted gene targets.
A microRNA target prediction and functional annotation database with a wiki interface.
Database and navigator tool for functional interpretation of miRNAs.
Search for information on unannotated non-coding mRNA transcripts.
Search for information on the published and predicted miRNA in vertebrate genomes.
Provides data about mature miRNAs, miRNAs targets, and the pathways that they are involved.
Perform deep-sequence analysis on next-generation sequence experiments.
Search for sequence and other information about noncoding regulatory RNAs.
Find information about pathways and noncoding RNA.
Provides information on piRNAs in Human, Mouse, Rat, and Drosophila.
Select effective siRNAs.
Design small interfering RNA (siRNA) sequences with maximum target-specificity for mammalian RNA interference.
Design siRNA by sequence or by GenBank accession number.
Identify potential siRNA target sites within an mRNA sequence.
Generate candidate siRNA sequences.
Analyzes the input sequence and find regions within that sequence which fit the siRNA Target Design Parameters.
Identify potential siRNA target sites within an mRNA sequence and then generates the sequences of the corresponding siRNAs.
Take a gene-centric view of siRNA experimental data.
A database of experimentally validated mammalian siRNAs with efficacy ratings.
Conduct efficient antiviral siRNA design.