Coding, coding sequence analysis, and gene prediction
Search this comprehensive BAC resource to find the available mapping, sequence, annotation and functional data for each BAC for different species.
Search and classify prokaryotic mobile genetic elements (MGEs).
Predict genes by comparing genomic sequences from evolutionary related organisms to each other.
Find information about Au-Rich elements in vertebrate mRNA 3'-untranslated regions (UTRs).
Predict gene in eukaryotic genomic sequences based on a generalized hidden Markov model.
A searchable databse of alternate ORFs for over 600 fully sequenced microbial genomes.
Predict putative bacteriocin open reading frames (ORFs) in a DNA sequence.
Detects and displays statistically significant position-specific sequence bias with reduced background noise.
Find regions suspected of containing coding sequences and visualize nucleotide diversity between two genomic or gene sequences.
Identify coding and noncoding conserved sequence tags through cross-species genome comparison.
Find the sum of the codon use of an organism from a list of 23093 organisms (2004).
Search for fusion sequences in human, mouse and rat genomes.
Measure synonymous codon usage bias within and across genomes.
Search for low complexity regions in long sequences and estimate complexity of groups of aligned sequences.
Predict eukaryotic genes based on comparative analysis of homologous sequences.
Predict and statistically evaluate predicted prokaryotic open reading frames (ORFs).
Search for gene-specific information in NCBI database.
Extract sequence and feature annotation, such as intron/exon structure, from GenBank entries and other GenBank format files.
Predict coding regions in prokaryotic and matured eukaryotic sequences.
An algorithm developed for the optimum codon selection using genetic algorithms.
Characterize and classify nucleotide sequences based on the genomic signature paradigm.
To predict the locations and exon-intron structures of genes in genomic sequences from vertebrate,invertebrate and plants.
Predict coding sequences.
Compare between genetic (coding/non-coding) and physics (helix/coil) segmentations of DNA sequences.
Predict genes in prokaryotic, eukaryotic and viral genomic sequences.
Predict genes in DNA sequences with different software tools.
Screen human genome for Human endogenous retroviruses (HERVs).
Search for information on annotate processed pseudogenes in complete genomes.
Search for meiotic recombination spots in human genome.
Visualize insertion sequences in prokaryotic genomes from ISfinder.
Search for bacterial insertion sequences (ISs).
Access to sequence databanks and to many tools of nucleic acid and protein sequence analyses.
To search for islands in prokarytoic genomic DNA sequences and analyze the phylogeny of the associated integrases.
Adapt target gene codon usage to expression hosts to improve heterologous protein synthesis.
Find full-length LTR retrotransposons in genome sequences.
Search for non-redundant microsatellites extracted from fully sequenced prokaryotic genomes.
Detect the signature of natural selection at the molecular level.
Find microRNA target predictions and expression profiles in this comprehensive resource.
Find information about methylation data from next generation sequencing data.
Search for experimental data on locations and characteristics of nucleosome formation sites.
An on-line PHP application that optimizes the codon usage of a DNA sequence to increase its expression level.
Analyze large amounts of ESTs or cDNAs from mammalia and fungi.
Search an evolving collection of human and mouse Open Reading Frame (ORF) clones (UltimateTM ORF Clones).
Web platform for cluster and cross-species analysis of microarray data.
Identify protein-coding regions in expressed sequence tag (EST)-derived sequences.
Predict protein coding genes in short, environmental DNA sequences.
Search for predicted ortholog group from 55 species.
Predict miRNA genes.
Tracks sequences of retrotransposed origin by scoring the signature results from an L1-mediated insertion within a genome.
Find sequences representing genomes, transcripts, and proteins.
Search for sequences and associated experimental information on synthetic (artificially engineered) genes from all peer-reviewed studies.
Search for short tandem repeat DNA in human genome.
Perform analysis on high-through put sequence data.
Detect, analyze and visualize alternative transcripts.
Conduct functional annotation of mRNA transcripts.
Identify full-length EST cDNAs and functionally annotate EST cDNAs.
An in-progress database devoted to the non-redundant analysis and evolutionary-based classification of mobile genetic elements.
Search for annotated genetic information of expressed sequence tags (ESTs) in different eukaryotic organisms.
Search for information on animal genes and phenotypes for which parent-of-origin effects have been reported.
Search for tRNA genes and snoRNA genes in genomic sequences.
Contains information regarding specific type and family of the TEs, genomic and mRNA location, sequence, supporting transcript accession and alignment to the TE consensus sequence.
Find 3'UTRs and their functional elements in C. elegans, including 3'UTR sequences, graphical displays, predicted and validated functional elements, secondary structure predictions, and other detailed data.
A web-based relational database of microsatellites present in unigene sequences covering 80 genomes.
Find mapping and expression information for a unigene cluster (ESTs and full-length mRNA sequences organized into clusters that each represent a unique known or putative gene)
Identify vector contamination in nucleic acid sequences.
A public online resource for identifying or designing 'universal' overgo-hybridization probes from conserved sequences that can be used to efficiently screen one or more genomic libraries from a designated group of species.
Search for annotations and sequence information for many vectors commonly used in molecular biology.
A public sequence processing service for raw EST traces.
Search all the eukaryotic protein-encoding DNA sequences contained in GenBank and find annotations on the splice sites and intron phases.
Search for comprehensive microRNA sequence data, annotation and predicted gene targets.
Locate TE-derived microRNAs.
Deformation energy and nucleosome-positioning score calculator.
Provides information on piRNAs in Human, Mouse, Rat, and Drosophila.
Use support vector machines for the classification of the origin of expressed sequence tags stemming from mixed host cDNA libraries.