MODBASE -- 3D Protein Models Database
What you can do:
Search for annotated comparative protein structure models for all available protein sequences.
Highlights:
- MODBASE is a database of annotated comparative protein structure models.
- The models are calculated by MODPIPE, an automated modeling pipeline that relies primarily on MODELLER for fold assignment, sequence-structure alignment, model building and model assessment.
- MODBASE currently contains 5,152,695 reliable models for domains in 1,593,209 unique protein sequences; only models based on statistically significant alignments and/or models assessed to have the correct fold are included.
- It also allows users to calculate comparative models on demand, through an interface to the MODWEB modeling server.
- Other resources integrated with MODBASE include databases of multiple protein structure alignments (DBAli), structurally defined ligand binding sites (LIGBASE), predicted ligand binding sites (AnnoLyze), structurally defined binary domain interfaces (PIBASE) and annotated single nucleotide polymorphisms and somatic mutations found in human proteins (LS-SNP, LS-Mut).
Keywords:
- protein structures
- protein domains
- protein modeling
- protein loops
- protein structure models
- protein sequence-structure alignment
- protein ligand-binding site prediction tool
- ligand binding sites
- human nsSNPs
- multiple protein structure alignments
- yeast protein-protein interaction
Literature & Tutorials:
PubMed Link: MODBASE
-- 2006 update: MODBASE: a database of annotated comparative protein structure models and associated resources
-- 2009 update: MODBASE, a database of annotated comparative protein structure models and associated resources
2011 Update: ModBase, a database of annotated comparative protein structure models, and associated resources.
-- 2006 update: MODBASE: a database of annotated comparative protein structure models and associated resources
-- 2009 update: MODBASE, a database of annotated comparative protein structure models and associated resources
2011 Update: ModBase, a database of annotated comparative protein structure models, and associated resources.
This record last updated: 02-25-2009