e2g -- An Interactive Web-based Server for Efficiently Mapping Large EST and cDNA Sets to Genomic Sequences
What you can do:
Map large expressed sequence tag (EST) and cDNA datasets to genomic DNA.
Highlights:
- The web server hosts large collections of EST sequences (e.g. 4.1 million mouse ESTs of 1.87 Gb as of 2003) in precomputed indexed data structures for efficient sequence comparison.
- Users can upload a genomic DNA sequence of interest and rapidly compare this to the complete collection of ESTs on the server.
- It delivers a mapping of the ESTs on the genomic DNA. The e2g web interface provides a graphical overview of the mapping. Alignments of the mapped EST regions with parts of the genomic sequence are visualized. Zooming functions allow the user to interactively explore the results.
- Mapped sequences can be downloaded for further analysis.
Keywords:
- cDNA mapping
- ESTs mapping
- EST mapping tool
- expressed sequence tags
- gene mapping
- gene mapping tool
- sequence alignments
- genomic sequence mapping
- genomic sequence mapping tool
Literature & Tutorials:
PubMed Link: e2g
This record last updated: 06-14-2005