Phydbac2 -- Phylogenomic Display of Bacterial Genes
What you can do:
Display phylogenomic profiles of bacterial protein sequences and infer pairwise gene functional relationships.
Highlights:
- While phylogenomic profiles remain the central focus, it now integrates chromosomal proximity and gene fusion analyses as two additional non-similarity-based indicators for inferring pairwise gene functional relationships.
- All presently available (January 2004) fully sequenced bacterial genomes and those of three lower eukaryotes are now included in the profiling process, thus increasing the initial number of reference genomes to 150.
- Phydbac2 allows the user to query more than 50 different genomes, including at least one member of each major bacterial group, most major pathogens and potential bio-terrorism agents.
- The search for co-evolving genes based on consensus profiles from multiple organisms, the display of Phydbac2 profiles side by side with COG information, the inclusion of KEGG metabolic pathway maps the production of chromosomal proximity maps, and the possibility of collecting and processing results from different Phydbac queries in a common shopping cart are the main new features of Phydbac2.
Keywords:
- phylogeny
- phylogenetics
- phylogenetic studies
- phylogenomic profiles
- gene annotations
- bacterial genomes
- prokaryote genomes
- bacterial protein analysis
- bacterial gene analysis
- consensus profiles
- gene fusion analysis
- chromosomal proximity analysis
- Genomic proximity analysis
- viral proteins
- sequence similarity search tool
Literature & Tutorials:
PubMed Link: Phydbac2
This record last updated: 05-26-2005