SuperPose -- a simple server for sophisticated structural superposition
What you can do:
Perform protein sequence and structure alignment.
Highlights:
- The server calculates both pairwise and multiple protein structure superpositions using a modified quaternion eigenvalue approach.
- It generates sequence alignments, structure alignments, PDB coordinates and RMSD statistics, as well as difference distance plots and images (both static and interactive) of the superimposed molecules.
- SuperPose employs a simple interface that requires only PDB files or accession numbers as input. All other superposition decisions are made by the program.
- SuperPose is uniquely able to superimpose structures that differ substantially in sequence, size or shape. It is also capable of handling a much larger range of superposition queries and situations than many standalone programs.
Keywords:
- protein structures analysis
- protein structure superpositions
- protein sequence alignments
- protein structure alignments
- protein structural alignments
- multiple protein structure alignments
Literature & Tutorials:
PubMed Link: SuperPose
This record last updated: 05-11-2005