RDP -- The Ribosomal Database Project
What you can do:
Provides researchers with quality-controlled bacterial and archaeal small subunit rRNA alignments and analysis tools.
Highlights:
- An improved alignment strategy uses the Infernal secondary structure aware aligner to provide a more consistent higher quality alignment and faster processing of user sequences.
- Substantial new analysis features include a new Pyrosequencing Pipeline that provides tools to support analysis of ultra high-throughput rRNA sequencing data.
- This pipeline offers a collection of tools that automate the data processing and simplify the computationally intensive analysis of large sequencing libraries.
- In addition, a new Taxomatic visualization tool allows rapid visualization of taxonomic inconsistencies and suggests corrections, and a new class Assignment Generator provides instructors with a lesson plan and individualized teaching materials.
Keywords:
- ribosomal RNA
- 16s rRNA data warehouse
- 16s rRNA
- bacterial rRNA
- mitochondrial small subunit rRNA
- RNA multiple alignments
- phylogenetic trees
- chimeric rRNA sequences
- terminal restriction fragment polymorphisms
- T-RFLP
- RNA annotations
Literature & Tutorials:
This record last updated: 11-19-2008