POPS -- a fast algorithm for solvent accessible surface areas at atomic and residue level
What you can do:
Calculate solvent accessible surface areas of proteins or nucleic acids.
Highlights:
- POPS is a fast algorithm to calculate accessible surfaces areas at atomic (default) and residue (coarse grained) level.
- Atomic and residue areas (the latter simulated with a single sphere centered at the C-alpha atom for amino acids and at the P atom for nucleotides) have been optimized versus accurate all-atoms methods (Naccess).
- It also allows for estimates of the loss of free energy of solvation upon complex formation, which should be particularly useful for the design of new proteinx96protein and proteinx96nucleic acid complexes.
Keywords:
- solvent accessible surface area analysis tool
- protein surface area analysis tool
- protein topology analysis tool
- protein-protein interaction analysis tool
- protein-nucleic acids interaction analysis tool
- protein structure analysis tool
Literature & Tutorials:
This record last updated: 04-21-2014