SiteSeer -- visualization and analysis of transcription factor binding sites in nucleotide sequences
What you can do:
Visualize mapped transcription factor binding sites in the upstream regions of either single or grouped eukaryotic genes.
Highlights:
- SiteSeer allows the user to map different sections of the TRANSFAC and SCPD databases (or a set of user-defined sites) onto nucleotide sequences.
- Additionally, users may restrict the analysis by expectation values for certain DNA words as well as by known binding sites specific to a given organism.
- This tool will prove particularly valuable for biologists who wish to examine sets of co-expressed or functionally-related genes and those who wish to visualize the positions of promoter sequences and generate displays for publications.
Keywords:
- transcription factor binding site analysis tool
- DNA-binding sites prediction tool
- promoter analysis tool
- transcription starting site prediction tool
- TSS prediction tool
- Transcription Initiation Site prediction tool
- TSS positions
- transcription factor binding sites
- transcription factor binding site visualization tool
- transcription factors
- transcription factor
- cis-elements
- cis-elements prediction tool
- regulatory element prediction tool
- promoter element prediction tool
Literature & Tutorials:
This record last updated: 06-14-2005