Signal search analysis server
What you can do:
Analyze nucleic acid sequence motifs that are positionally correlated with a functional site such as a transcription initiation site for instance.
Highlights:
- The signal search analysis server provides access to four different computer programs as well as to a large number of pre-compiled functional site collections.
- The programs offered allow: (i) the identification of non-random sequence regions under evolutionary constraint; (ii) the detection of consensus sequence-based motifs that are over- or under-represented at a particular distance from a functional site; (iii) the analysis of the positional distribution of a consensus sequence- or weight matrix-based sequence motif around a functional site; and (iv) the optimization of a weight matrix description of a locally over-represented sequence motif.
Keywords:
- promoter analysis tool
- promoter prediction tool
- transcription starting site prediction tool
- TSS prediction tool
- Transcription Initiation Site prediction tool
- TSS positions
- translation initiation sites
- translation initiation site prediction tool
- regulatory element prediction tool
- promoter element prediction tool
Literature & Tutorials:
PubMed Link: Signal search analysis server
This record last updated: 06-15-2005