Fragment Finder -- a web-based software to identify similar three-dimensional protein structural motif

What you can do:
Use a Web-based interactive search engine to retrieve the user desired similar 3D structural fragments from a selected subset of 25 or 90% non-homologous protein chains.
Highlights:
  • The search is based on the comparison of the main chain backbone conformational angles.
  • Additionally, the queried motifs can be superimposed to find out how similar the structural fragments are, so that the information can be effectively used in molecular modeling.
  • The engine has facilities to view the resultant superposed or individual 3D structure(s) on the client machine.
Keywords:
  • protein structure analysis tool
  • Amino Acid Motifs analysis tool
  • protein structure alignment
This record last updated: 08-26-2005
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