TMBETA-NET -- discrimination and prediction of membrane spanning xdf-strands in outer membrane proteins
What you can do:
Discriminate outer membrane proteins and predict their membrane spanning xdf-strand segments.
Highlights:
- The prediction of membrane spanning segments is mainly based on feed forward neural network and refined with beta-strand length.
- The program takes the amino acid sequence as input and displays the type of the protein along with membrane-spanning beta-strand segments as a stretch of highlighted amino acid residues.
- Further, the probability of residues to be in transmembrane beta-strand has been provided with a coloring scheme.
- It was observed that outer membrane proteins were discriminated with an accuracy of 89% and their membrane spanning beta-strand segments at an accuracy of 73% just from amino acid sequence information.
Keywords:
- protein secondary structure prediction tool
- outer membrane proteins
- membrane spanning xdf-strand prediction tool
- membrane protein structure analysis tool
- transmembrane beta strands prediction tool
Literature & Tutorials:
This record last updated: 09-22-2005