Manipulating multiple sequence alignments via MaM and WebMaM
What you can do:
Process and manipulate multiple alignments of genomic sequence.
Highlights:
- MaM computes the exact location of common repeat elements, exons and unique regions within aligned genomics sequences using a variety of user identified programs, databases and/or tables.
- The program can extract subalignments, corresponding to these various regions of DNA to be analyzed independently or in conjunction with other elements of genomic DNA.
- Graphical displays further allow an assessment of sequence variation throughout these different regions of the aligned sequence, providing separate displays for their repeat, non-repeat and coding portions of genomic DNA.
- The program should facilitate the phylogenetic analysis and processing of different portions of genomic sequence as part of large-scale sequencing efforts.
Keywords:
- genomic sequence analysis tool
- multiple sequence alignment tool
- genomic sequence alignment tool
- DNA sequence alignment tool
- phylogenetic analysis tool
- repetitive sequences
Literature & Tutorials:
This record last updated: 11-14-2005