CisMols Analyzer -- identification of compositionally similar cis-element clusters in ortholog conserved regions of coordinately expressed genes
What you can do:
Analyze and identify maximal numbers of compositionally similar and phylogenetically conserved cis-regulatory element clusters from a list of user-selected genes.
Highlights:
- The authors extended an ortholog gene-pair database with additional analytical architecture to allow for the analysis and identification of maximal numbers of compositionally similar and phylogenetically conserved cis-regulatory element clusters from a list of user-selected genes.
- The system has been successfully tested with a series of functionally related and microarray profile-based co-expressed ortholog pairs of promoters and genes using known regulatory regions as training sets and co-expressed genes in the olfactory and immunohematologic systems as test sets.
Keywords:
- transcription factor binding site prediction tool
- transcription factor binding site analysis tool
- DNA-binding sites prediction tool
- cis-elements prediction tool
- cis-regulatory elements prediction tool
- DNA sequence analysis tool
- promoter analysis tool
- promoter elements prediction tool
- combinational cis-regulatory elements
- vertebrate genomes
- vertebrate gene regulation
- synonymous regulatory elements prediction tool
- transcription factors
- response elements
- cis-elements
- cis-regulatory modules analysis tool
- cis-clusters
Literature & Tutorials:
This record last updated: 11-18-2005