CONREAL web server -- identification and visualization of conserved transcription factor binding sites
What you can do:
Identify and visualize conserved transcription factor bindings sites in orthologous promoters.
Highlights:
- This Web serve uses orthologous sequences and phylogenetic footprinting approaches to detect conserved and potentially functional regulatory sequences.
- The CONREAL (conserved regulatory elements anchored alignment) web server provides a versatile interface to CONREAL-, LAGAN-, BLASTZ- and AVID-based predictions of conserved TFBSs in orthologous promoters.
- Comparative analysis using different algorithms can be started by keyword without any prior sequence retrieval.
Keywords:
- transcription factor binding site prediction tool
- transcription factor binding site analysis tool
- DNA-binding sites prediction tool
- cis-elements prediction tool
- cis-regulatory elements prediction tool
- promoter analysis tool
- promoter elements prediction tool
- transcription factors
- response elements
- cis-elements
- cis-regulatory modules analysis tool
- regulatory motifs
- regulatory motif discovery tool
- orthologous promoters
- phylogenetic footprinting
- phylogeny
Literature & Tutorials:
This record last updated: 11-22-2005