cisRED -- a database system for genome-scale computational discovery of regulatory elements
What you can do:
Search for conserved regulatory elements.
Highlights:
- cisRED is a database for conserved regulatory elements that are identified and ranked by a genome-scale computational system.
- The database and high-throughput predictive pipeline are designed to address diverse target genomes in the context of rapidly evolving data resources and tools.
- Motifs are predicted in promoter regions using multiple discovery methods applied to sequence sets that include corresponding sequence regions from vertebrates.
- The motif significance is estimated by applying discovery and post-processing methods to randomized sequence sets that are adaptively derived from target sequence sets, retain motifs with p-values below a threshold and identify groups of similar motifs and co-occurring motif patterns.
- The database offers information on atomic motifs, motif groups and patterns.
Keywords:
- transcription factor binding site analysis tool
- DNA-binding sites prediction tool
- promoter analysis tool
- transcription factor binding sites
- transcription factor binding site visualization tool
- transcription factors
- cis-elements
- cis-elements prediction tool
- regulatory element prediction tool
- promoter element prediction tool
Literature & Tutorials:
This record last updated: 01-13-2005