ICDS database -- interrupted CoDing sequences in prokaryotic genomes

URL:
http://www-bio3d-igbmc.u-strasbg.fr/ICDS/
What you can do:
Search for interrupted coding sequence detected in 116 complete prokaryotic genomes.
Highlights:
  • The Interrupted CoDing Sequence database contains ICDS detected by a similarity-based approach in 116 complete prokaryotic genomes.
  • ICDS can be retrieved by species browsing or similarity searches via a web interface.
  • The definition of each interrupted gene is provided as well as the ICDS genomic localization with the surrounding sequence.
  • To facilitate the experimental characterization of ICDS, optimized primers for re-sequencing purposes are also suggested.
Keywords:
  • Interrupted Coding Sequences
  • Interrupted Coding Sequence prediction
  • sequencing primers
  • in-frame stop codons
  • frameshifts
  • prokaryotic genomes
  • prokaryotic genome sequencing
Literature & Tutorials:
PubMed Link: ICDS database -- interrupted CoDing sequences in prokaryotic genomes
This record last updated: 02-08-2006
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