Phytophthora functional genomics database (PFGD) -- functional genomics of phytophthorax96plant interactions
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What you can do:
Search for molecular biological information for Phytophthorax96plant interaction research.
Highlights:
- PFGD contains transcript, genomic, gene expression and functional assay data for Phytophthora infestans, which causes late blight of potato, and Phytophthora sojae, which affects soybeans.
- Using PFGD, the objective is to characterize effector genes and proteins with regards to primary sequence, gene expression, biological activity, cellular responses and cellular localization during infection.
- Automated analyses are performed on all sequence data, including consensus sequences derived from clustered and assembled expressed sequence tags.
- The PFGD search filter interface allows intuitive navigation of transcript and genomic data organized by library and derived queries using modifiers, annotation keywords or sequence names.
- BLAST services are provided for libraries built from the transcript and genomic sequences.
- Transcript data visualization tools include Quality Screening, Multiple Sequence Alignment and Features and Annotations viewers.
- A genomic browser that supports comparative analysis via novel dynamic functional annotation comparisons is also provided.
Keywords:
- Phytophthora Genome
- Plant-Microbe Interactions
- phytophthorax96plant interactions
- Phytophthora pathogens
- plant pathogens
- Phytophthora infestans
- Phytophthora sojae
- Oomycetes
- virulence factors
- virus-based high throughput functional expression assays
- effector proteins
- effector genes
- plant resistance responses
- plant diseases
- expressed sequence tags
- ESTs
Literature & Tutorials:
This record last updated: 02-14-2006