H-InvDB -- Human Invitational Database
What you can do:
Search for annotated information on human genes and transcripts.
Highlights:
- H-InvDB is a comprehensive annotation resource of human genes and transcripts, and consists of two main views and six sub-databases.
- The latest release provides the annotation for 219,765 human transcripts in 43,159 human gene clusters based on human full-length cDNAs and mRNAs.
- It now provides several new annotation features, such as mapping of microarray probes, new gene models, relation to known ncRNAs and information from the Glycogene database.
- H-InvDB also provides useful data mining resources-'Navigation search', 'H-InvDB Enrichment Analysis Tool (HEAT)' and web service APIs.
- 'Navigation search' is an extended search system that enables complicated searches by combining 16 different search options.
- HEAT is a data mining tool for automatically identifying features specific to a given human gene set.
- HEAT searches for H-InvDB annotations that are significantly enriched in a user-defined gene set, as compared with the entire H-InvDB representative transcripts.
- H-InvDB now has web service APIs of SOAP and REST to allow the use of H-InvDB data in programs, providing the users extended data accessibility.
Keywords:
- human genome
- human genome annotation
- human transcripts
- human mRNA
- human single nucleotide polymorphisms
- human SNPs mapping
- human full-length cDNAs
- human protein structures
- human gene structures
- human gene alternative splicing
- human alternative splicing isoforms
- human metabolic pathways
- human protein subcellular localization
- human polymorphic microsatellite repeats
Literature & Tutorials:
This record last updated: 03-15-2010