GabiPD -- a plant integrative 'omics' database
What you can do:
Search for comprehensive and extensive information on various plant genomes generated by a German collaborative network of plant genomics research.
Highlights:
- The GABI Primary Database was established in the frame of the German initiative for Genome Analysis of the Plant Biological System (GABI).
- The goal of GabiPD is to collect, integrate, analyze and visualize primary information from GABI projects.
- GabiPD constitutes a repository and analysis platform for a wide array of heterogeneous data from high-throughput experiments in several plant species.
- Data from different 'omics' fronts are incorporated (i.e. genomics, transcriptomics, proteomics and metabolomics), originating from 14 different model or crop species.
- We have developed the concept of GreenCards for text-based retrieval of all data types in GabiPD (e.g. clones, genes, mutant lines).
- All data types point to a central Gene GreenCard, where gene information is integrated from genome projects or NCBI UniGene sets.
- The centralized Gene GreenCard allows visualizing ESTs aligned to annotated transcripts as well as displaying identified protein domains and gene structure.
- Moreover, GabiPD makes available interactive genetic maps from potato and barley, and protein 2DE gels from Arabidopsis thaliana and Brassica napus.
- Gene expression and metabolic-profiling data can be visualized through MapManWeb.
- By the integration of complex data in a framework of existing knowledge, GabiPD provides new insights and allows for new interpretations of the data.
Keywords:
- plant genomes
- plant SNPs
- plant physical maps
- plant genetic maps
- plant 2D-PAGE gels
- Arabidopsis gene expression
- Arabidopsis gene prediction
Literature & Tutorials:
Link to the online documentation: GaBi
PubMed Link: GabiPD: the GABI primary database--a plant integrative 'omics' database
PubMed Link: GabiPD: the GABI primary database--a plant integrative 'omics' database
This record last updated: 12-13-2012