PDB_Hydro -- incorporating dipolar solvents with variable density in the Poissonx96Boltzmann treatment of macromolecule electrostatics

URL:
http://lorentz.immstr.pasteur.fr/pdb_hydro.php
What you can do:
Calculate the electrostatic properties of macromolecules.
Highlights:
  • This site provides tools for mutating and solvating PDB files using new methodologies.
  • It identifies strongly and poorly solvated exposed surfaces on proteins (see Figure below) and helps identify potential protein-interaction zones.
  • The web site includes options that permit mutations in the sequence as well as reconstruction of missing side chain and/or main chain atoms.
  • These tools are accessible independently from the electrostatics calculation, and can be used for other modeling purposes.
Keywords:
  • protein electrostatic properties analysis tool
  • protein structure analysis tool
  • protein interface analysis tool
  • protein-interaction analysis tool
  • protein dimerization interface prediction tool
  • lipid binding regions prediction
  • macromolecule electrostatics analysis tool
Literature & Tutorials:
PubMed Link: PDB_Hydro -- incorporating dipolar solvents with variable density in the Poissonx96Boltzmann treatment of macromolecule electrostatics
This record last updated: 07-17-2006
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