CEAS -- cis-regulatory element annotation system
What you can do:
Analyze data from high throughput ChIP-chip experiments to annotate cis-regulatory elements.
Highlights:
- Cis-regulatory Element Annotation System (CEAS) integrates many useful tools
- to simplify ChIP-chip analysis for biologists. It can handle hundreds or
- thousands of regions from high throughput ChIP-chip experiments.
- Given genome-scale ChIP regions, CEAS retrieves repeat-masked genomic sequences, calculates GC content, plots evolutionary conservation, maps nearby genes and identifies enriched transcription factor-binding motifs.
- Biologists can utilize CEAS to retrieve useful information for ChIP-chip validation and assemble important knowledge.
Keywords:
- transcription factor binding site analysis tool
- cis-regulatory elements annotation tool
- gene regulatory element
- promoter sequences analysis
- ChIP-chip data analysis tool
- ChIP-region analysis tool
Literature & Tutorials:
PubMed Link: CEAS -- cis-regulatory element annotation system
This record last updated: 08-02-2006