PLOTREP -- a web tool for defragmentation and visual analysis of dispersed genomic repeats

URL:
http://repeats.abc.hu/cgi-bin/plotrep.pl
What you can do:
Identify interspersed repetitive elements in BAC-sized or smaller genomic regions.
Highlights:
  • PLOTREP is a tool designed to post-process results obtained by sequence similarity search and merge fragments belonging to the same copy of a repeat.
  • The software allows rapid visual inspection of the results using a dot-plot like graphical output.
Keywords:
  • interspersed repetitive elements identification tool
  • genomic repeats detection
  • transposons
  • Retrotransposons
Literature & Tutorials:
PubMed Link: PLOTREP -- a web tool for defragmentation and visual analysis of dispersed genomic repeats
This record last updated: 08-05-2006
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