TMBETA-GENOME -- database for annotated xdf-barrel membrane proteins in genomic sequences
What you can do:
Search for predicted and annotated beta-barrel membrane proteins (TMBs) for all completed genomes.
Highlights:
- TMBETA-GENOME is developed for annotated xdf-barrel membrane proteins in genomic sequences using statistical methods and machine learning algorithms.
- The statistical methods are based on amino acid composition, reside pair preference and motifs.
- In machine learning techniques, the combination of amino acid and dipeptide compositions has been used as main attributes.
- Annotations have been made using the criterion based on the identification of xdf-barrel membrane proteins and exclusion of globular and transmembrane helical proteins.
Keywords:
- protein structures
- transmembrane barrel protein prediction
- beta-barrel proteins
- beta-barrel proteins annotation
- xdf-barrel protein
- beta-barrel protein prediction
- transmembrane protein prediction
- protein secondary structures
Literature & Tutorials:
This record last updated: 03-21-2007