iGNM: a database of protein functional motions based on Gaussian Network Model

URL:

http://ignm.ccbb.pitt.edu/

What you can do:

Search for the information on the equilibrium dynamics at the level of individual residues for Protein Data Bank (PDB) structures.

Highlights:

This web server hosts a database of output files obtained from running GNM calculations on PDB files and the means for visualizing these files in both 2-D and 3-D. To obtain the iGNM output files for PDB structures deposited after Sept 23rd 2003,
* Mode Shapes: Use this section to view ribbon diagrams or 2-D plotted graphs of protein slow modes, fast modes, average slow modes, and average fast modes files.
*Database Search: Use this section to perform a simple search of the iGNM database for retrieving and downloading GNM output files for a specified protein.
*B-Factors: Use this section to compare the ribbon diagrams or 2-D plotted graphs of both Theoretical and Experimental protein B-factors.
*PDB Query: Use this section to perform a search on both the PDB and the iGNM server to locate and view .pdb files and related GNM files.
*Submit Structure: Use this section to submit your own customized structure file (obtained from comparative modeling or domain-truncated PDB files) for GNM computation. The results will be stored temporarily to allow you to visualize or download them from our server.

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This record last updated: 10-17-2007