Many Microbe Microarrays Database -- uniformly normalized Affymetrix compendia with structured experimental metadata
URL:
What you can do:
Facilitates the analysis and visualization of expression data in compendia compiled from multiple laboratories.
Highlights:
- M3D contains over a thousand Affymetrix microarrays for Escherichia coli, Saccharomyces cerevisiae and Shewanella oneidensis.
- The expression data is uniformly normalized to make the data generated by different laboratories and researchers more comparable.
- To facilitate computational analyses, M3D provides raw data (CEL file) and normalized data downloads of each compendium.
- In addition, web-based construction, visualization and download of custom datasets are provided to facilitate efficient interrogation of the compendium for more focused analyses.
- The experimental condition metadata in M3D is human curated with each chemical and growth attribute stored as a structured and computable set of experimental features with consistent naming conventions and units.
- All versions of the normalized compendia constructed for each species are maintained and accessible in perpetuity to facilitate the future interpretation and comparison of results published on M3D data.
Keywords:
- Escherichia coli
- Gene Expression Profiling
- Oligonucleotide Array Sequence Analysis
- Saccharomyces cerevisiae
- Shewanella
- microbe
- microbial
Literature & Tutorials:
This record last updated: 04-15-2008