PhylomeDB -- a database for genome-wide collections of gene phylogenies
What you can do:
Database of complete phylomes derived for different genomes within a specific taxonomic range.
Highlights:
- All phylomes in the database are built using a high-quality phylogenetic pipeline that includes evolutionary model testing and alignment trimming phases.
- For each genome, PhylomeDB provides the alignments, phylogentic trees and tree-based orthology predictions for every single encoded protein.
- The current version of PhylomeDB includes the phylomes of Human, the yeast Saccharomyces cerevisiae and the bacterium Escherichia coli, comprising a total of 32 289 seed sequences with their corresponding alignments and 172 324 phylogenetic trees.
Keywords:
- Escherichia coli
- Humans
- Phylogeny
- Protein classification
- Saccharomyces cerevisiae
- Sequence Alignment
- e. coli
- s. cerevisiae
- phylome
- phylogenetics
- phylogeny
This record last updated: 04-17-2014