AutoPSI -- Automated Protein Structure Identification
What you can do:
Database for automatic structural classification of protein sequences and structures
Highlights:
- AutoPSI delivers predicted SCOP classifications for several thousand yet unclassified PDB entries as well as millions of UniProt sequences in an automated fashion.
- In order to obtain predictions, we make use of two recently published methods, namely AutoSCOP (sequence-based) and Vorolign (structure-based) and the consensus of both.
- With our predictions, we bridge the gap between SCOP versions for proteins with known structures in the PDB and additionally make structure predictions for a very large number of UniProt proteins.
Keywords:
- protein structure
- protein sequence analysis
- SCOP
- structural classification
Literature & Tutorials:
PubMed Link of a related article: AutoPSI: a database for automatic structural classification of protein sequences and structures
This record last updated: 04-29-2008