RNACompress -- compress RNA sequences and their secondary structures

URL:
http://www.tongji.edu.cn/~qiliu/RNACompress.html
What you can do:
Grammar-based compression and informational complexity measurement of RNA secondary structure.
Highlights:
  • An efficient compression algorithm for RNA sequence and structural information is needed for the storage and analysis of such data.
  • RNACompress employs an efficient grammar-based model to compress RNA sequences and their secondary structures.
  • The main goals of this algorithm are two fold: (1) present a robust and effective way for RNA structural data compression; (2) design a suitable model to represent RNA secondary structure as well as derive the informational complexity of the structural data based on compression.
Keywords:
  • Nucleic Acid Conformation
  • RNA compression
  • RNA secondary structure
  • RNA structural data compression
Literature & Tutorials:
PubMed Link: RNACompress: Grammar-based compression and informational complexity measurement of RNA secondary structure
This record last updated: 04-21-2014
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