CREx -- Common interval Rearrangement Explorer
What you can do:
Infer genomic rearrangements based on common intervals.
Highlights:
- CREx heuristically determines pairwise rearrangement events in unichromosomal genomes.
- CREx considers transpositions, reverse transpositions, reversals and tandem-duplication-random-loss (TDRL) events.
- It supports the user in finding parsimonious rearrangement scenarios given a phylogenetic hypothesis.
- CREx is based on common intervals, which reflect genes that appear consecutively in several of the input gene orders.
Keywords:
- Chromosome Mapping
- Gene Rearrangement
- Genomic Rearrangement
- Transpositions
- TDRL
Literature & Tutorials:
This record last updated: 12-2-2008