ProSMoS -- Protein Structure Motif Search

URL:
http://prodata.swmed.edu/ProSMoS/
What you can do:
Analyze general and distant protein structural similarities.
Highlights:
  • ProSMoS is a web-server that performs motif-based structure searches.
  • It converts 3D structure into an interaction matrix representation including the SSE types, handednesses of connections between SSEs, coordinates of SSE starts and ends, types of interactions between SSEs and beta-sheet definitions.
  • For a user-defined structure pattern, ProSMoS lists all structures from a database that contain this pattern.
Keywords:
  • tertiary protein structure
  • motif-based structure search
  • structural biology
Literature & Tutorials:
PubMed Link: ProSMoS server: a pattern-based search using interaction matrix representation of protein structures
This record last updated: 08-14-2009
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