RASMOT-3D PRO -- Recursive Automatic Search of MOTif in 3D structures of PROteins
What you can do:
Search for proteins with similar groups of residues that have particular topologies.
Highlights:
- RASMOT-3D PRO is a webserver that performs a systematic search in 3D structures of protein for a set of residues exhibiting a particular topology.
- Comparison is based on Calpha and Cbeta atoms in two steps: inter-atomic distances and RMSD.
- It takes a PDB file containing the 3D coordinates of the searched motif and provides an interactive list of identified protein structures exhibiting residues of similar topology as the motif searched.
- Each solution can be graphically examined on the website.
- The topological search can be conducted in structures described in PDB files uploaded by the user or in those deposited in the PDB.
Keywords:
- protein topology
- protein tertiary structure
- protein motif
Literature & Tutorials:
PubMed Link: RASMOT-3D PRO: a 3D motif search webserver
This record last updated: 08-18-2009