DiProGB -- Dinucleotide Properties Genome Browser
What you can do:
Visualize genomes of interest.
Highlights:
- DiProGB is a genome browser that encodes the primary nucleotide sequence by thermodynamical and geometrical dinucleotide properties.
- The nucleotide sequence is thus converted into a sequence graph.
- This visualization, supported by different graph manipulation options, facilitates genome analyses.
- It can identify genomic regions where certain physical properties are more conserved than the nucleotide sequence itself.
- Most of the DiProGB tools can be applied to both, the primary nucleotide sequence and the sequence graph.
- They include motif and repeat searches as well as statistical analyses.
- DiProGB adds a new dimension to the common genome analysis approaches by taking into account the physical properties of DNA and RNA.
Keywords:
- genome analysis
- sequence graph
- nucleotide sequence
- thermodynamical dinucleotide properties
- geometrical dinucleotide properties
Literature & Tutorials:
PubMed Link: DiProGB: the dinucleotide properties genome browser
This record last updated: 11-13-2009