3D-SURFER -- Protein Surface Comparison and Analysis
What you can do:
Find information about proteins from their surface shape.
Highlights:
- 3D-SURFER is a web-based tool designed to facilitate high-throughput comparison and characterization of proteins based on their surface shape.
- As each protein is effectively represented by a vector of 3D Zernike descriptors, comparison times for a query protein against the entire PDB take, on an average, only a couple of seconds.
- The web interface has been designed to be as interactive as possible with displays showing animated protein rotations, CATH codes and structural alignments using the CE program.
- Geometrically interesting local features of the protein surface, such as pockets that often correspond to ligand binding sites as well as protrusions and flat regions can also be identified and visualized.
Keywords:
- protein structure
- protein surface structure
- ligand binding
- protein structure visualization
- protein comparison
Literature & Tutorials:
This record last updated: 12-10-09