CaSNP -- Cancer SNP Database
What you can do:
Find information about copy number alterations from SNP data.
Highlights:
- CaSNP is a database for storing and interrogating quantitative CNA data, with curated ∼11,500 SNP arrays on 34 different cancer types in 104 studies.
- With a user input of region or gene of interest, CaSNP will return the CNA information summarizing the frequencies of gain/loss and averaged copy number for each study, and provide links to download the data or visualize it in UCSC Genome Browser.
- It also displays the heatmap showing copy numbers estimated at each SNP marker around the query region across all studies for a more comprehensive visualization.
Keywords:
- cancer genes
- cancer SNP
- CNA
- copy number alteration
Literature & Tutorials:
This record last updated: 06-14-2011